2026Nature Communications17 (1) : 8262
A systematic identification of resistance determinants to antisense antibiotics suggests adaptation strategies dependent on the delivery peptide
Mulkern A, Vu T, Popella L, Kerrinnes T, Ðurica-Mitić S, Halte M, Dresbach-Hill K, Uhlemann A, Uphoff S, Barquist L, Vogel J, Galardini M
2025Nature Communications16 (1) : 3783
Uncovering nitroxoline activity spectrum, mode of action and resistance across Gram-negative bacteria
Cacace E, Tietgen M, Steinhauer M, Mateus A, Schultze T, Eckermann M, Galardini M, Varik V, Koumoutsi A, Parzeller J, Corona F, Orakov A, Knopp M, Brauer-Nikonow A, Bork P, Romao C, Zimmermann M, Cloetens P, Savitski M, Typas A, Göttig S
2025Microbial Genomics11 (2) : 10.1099/mgen.0.001349
microGWAS: a computational pipeline to perform large-scale bacterial genome-wide association studies
Burgaya J, Damaris B, Fiebig J, Galardini M
2022Nature609 (7925) : 144-150
Bacterial retrons encode phage-defending tripartite toxin-antitoxin systems
Bobonis J, Mitosch K, Mateus A, Karcher N, Kritikos G, Selkrig J, Zietek M, Monzon V, Pfalz B, Garcia-Santamarina S, Galardini M, Sueki A, Kobayashi C, Stein F, Bateman A, Zeller G, Savitski M, Elfenbein J, Andrews-Polymenis H, Typas A
2023Bioinformatics (oxford, England)39 (4) : btad171
ChemGAPP: a tool for chemical genomics analysis and phenotypic profiling
Doherty H, Kritikos G, Galardini M, Banzhaf M, Moradigaravand D
2023Nature Communications14 (1) : 3667
Epistatic interactions between the high pathogenicity island and other iron uptake systems shape Escherichia coli extra-intestinal virulence
Royer G, Clermont O, Marin J, Condamine B, Dion S, Blanquart F, Galardini M, Denamur E
2022Plos Genetics18 (3) : e1010112
Genome wide association study of Escherichia coli bloodstream infection isolates identifies genetic determinants for the portal of entry but not fatal outcome
Denamur E, Condamine B, Esposito-Farèse M, Royer G, Clermont O, Laouenan C, Lefort A, de Lastours V, Galardini M, COLIBAFI, SEPTICOLI groups
2023Plos Genetics19 (8) : e1010842
The bacterial genetic determinants of Escherichia coli capacity to cause bloodstream infections in humans
Burgaya J, Marin J, Royer G, Condamine B, Gachet B, Clermont O, Jaureguy F, Burdet C, Lefort A, de Lastours V, Denamur E, Galardini M, Blanquart F, Colibafi/Septicoli & Coliville groups
2023Scientific Reports13 (1) : 7038
The DNA cytosine methylome revealed two methylation motifs in the upstream regions of genes related to morphological and physiological differentiation in Streptomyces coelicolor A(3)2 M145
Pisciotta A, Sampino A, Presentato A, Galardini M, Manteca A, Alduina R
2023Microbial Genomics9 (11) : 001129
Reduced ambiguity and improved interpretability of bacterial genome-wide associations using gene-cluster-centric k-mers
Sommer H, Djamalova D, Galardini M