2025Microbial Genomics11 (2) : 10.1099/mgen.0.001349
microGWAS: a computational pipeline to perform large-scale bacterial genome-wide association studies
Burgaya J, Damaris B, Fiebig J, Galardini M
Bacteriology
Galardini Lab
Publications
2024Genome Biology25 (1) : 228
Real-time identification of epistatic interactions in SARS-CoV-2 from large genome collections
Innocenti G, Obara M, Costa B, Jacobsen H, Katzmarzyk M, Cicin-Sain L, Kalinke U, Galardini M
2024Nature Communications15 (1) : 952
Anti-CRISPR Anopheles mosquitoes inhibit gene drive spread under challenging behavioural conditions in large cages
D'Amato R, Taxiarchi C, Galardini M, Trusso A, Minuz R, Grilli S, Somerville A, Shittu D, Khalil A, Galizi R, Crisanti A, Simoni A, Müller R
2023Microbial Genomics9 (11) : 001129
Reduced ambiguity and improved interpretability of bacterial genome-wide associations using gene-cluster-centric k-mers
Sommer H, Djamalova D, Galardini M
2023Plos Genetics19 (8) : e1010842
The bacterial genetic determinants of Escherichia coli capacity to cause bloodstream infections in humans
Burgaya J, Marin J, Royer G, Condamine B, Gachet B, Clermont O, Jaureguy F, Burdet C, Lefort A, de Lastours V, Denamur E, Galardini M, Blanquart F, Colibafi/Septicoli & Coliville groups
2023Nature Communications14 (1) : 3667
Epistatic interactions between the high pathogenicity island and other iron uptake systems shape Escherichia coli extra-intestinal virulence
Royer G, Clermont O, Marin J, Condamine B, Dion S, Blanquart F, Galardini M, Denamur E
2023Scientific Reports13 (1) : 7038
The DNA cytosine methylome revealed two methylation motifs in the upstream regions of genes related to morphological and physiological differentiation in Streptomyces coelicolor A(3)2 M145
Pisciotta A, Sampino A, Presentato A, Galardini M, Manteca A, Alduina R
2023Bioinformatics (oxford, England)39 (4) : btad171
ChemGAPP: a tool for chemical genomics analysis and phenotypic profiling
Doherty H, Kritikos G, Galardini M, Banzhaf M, Moradigaravand D
2022Nature609 (7925) : 144-150
Bacterial retrons encode phage-defending tripartite toxin-antitoxin systems
Bobonis J, Mitosch K, Mateus A, Karcher N, Kritikos G, Selkrig J, Zietek M, Monzon V, Pfalz B, Garcia-Santamarina S, Galardini M, Sueki A, Kobayashi C, Stein F, Bateman A, Zeller G, Savitski M, Elfenbein J, Andrews-Polymenis H, Typas A
2022Plos Genetics18 (3) : e1010112
Genome wide association study of Escherichia coli bloodstream infection isolates identifies genetic determinants for the portal of entry but not fatal outcome
Denamur E, Condamine B, Esposito-Farèse M, Royer G, Clermont O, Laouenan C, Lefort A, de Lastours V, Galardini M, COLIBAFI, SEPTICOLI groups
